Ecotoxicologie Intégrative (ECI)

Objectifs

L’équipe ECI a pour objectif de comprendre l’impact des contaminants chimiques d’origine anthropique sur les assemblages biologiques, dans un contexte de réalisme écologique, en considérant notamment les interactions des contaminants entre eux et avec d’autres facteurs de stress.

Pour cela, l’équipe ECI s’appuiera sur les outils développés lors des contrats précédents, notamment en matière de biomarqueurs de (géno)toxicité. L’approche intégrative passera par l’expérimentation en micro-/mésocosmes, dans le but d’appréhender en conditions contrôlées l’impact des contaminants sur des assemblages plurispécifiques, avec l’aide de la modélisation utilisée à des fins prédictives et cognitives. L’équipe ECI aura à cœur d’appuyer sa démarche sur des chantiers d’étudein natura, concernés par des problématiques concrètes de contamination (et concentrant par ailleurs des moyens financiers et humains). La Zone Atelier Pyrénées-Garonne offrira localement cette possibilité. Les travaux initiés en Camargue, concernant l’impact des contaminations environnementales sur les herbiers de zostères, seront poursuivis. L’équipe ECI sera par ailleurs impliquée, au sein d’un consortium franco-équatorien, dans l’étude de l’impact de pollutions par les hydrocarbures et métaux associés sur des cours d’eau amazoniens.

L’originalité de la démarche de l’équipe ECI réside dans la mise en œuvre d’approches complémentaires à différents niveaux d’organisation biologiques pour progresser dans la compréhension des impacts environnementaux liés aux contaminations chimiques.

Objectifs Scientifiques – Questions

1) Quels sont les mécanismes conditionnant la sensibilité des organismes au stress chimique ?

De nombreuses questions demeurent concernant l’effet combiné des contaminants en mélange, ou en interaction avec d’autres stress environnementaux. Par ailleurs, Les mécanismes d’action de contaminants émergents, tels que certains nanomatériaux manufacturés, sont encore loin d’être totalement élucidés.

L’équipe ECI dispose des compétences et des outils pour appréhender les mécanismes de toxicité liés notamment au stress oxydant, aux dommages causés au matériel génétique, ou encore aux altérations du métabolisme énergétique des organismes. Une attention particulière sera accordée à ce dernier point, dans la mesure où le métabolisme énergétique joue un rôle central dans la survie des organismes et se trouve fortement sollicité en condition de stress pour la mise en place des systèmes de défense. Le rapport coût / bénéfice de la réponse plastique aux stress peut ainsi conditionner la valeur adaptative des individus et la dynamique des populations. Nous utiliserons des outils moléculaires tels que la protéomique et la métabolomique afin d’évaluer les effets sur les organismes de situations de stress complexes (variations de température, cocktails de contaminants…).

Une attention particulière sera portée à la variabilité intraspécifique de la réponse des organismes aux contaminants, à ce jour encore peu étudiée, alors même que la compréhension de son déterminisme est essentielle pour évaluer les potentialités d’accommodation ou d’adaptation face au stress chimique. Nous nous attacherons notamment à distinguer la part de la polluosensibilité (et des traits morpho-anatomiques ou physiologiques associés) expliquée par la plasticité phénotypique des organismes, et celle liée aux différences entre génotypes. La variabilité génétique existant au niveau d’espèces modèles (e.g. Arabidopsis thaliana ; comparaison de mutants à la forme sauvage) sera par ailleurs mise à profit pour comprendre les mécanismes de transfert et les effets de certains nanomatériaux.

2) Quel est le rôle des effets directs et indirects des contaminants dans la structuration des communautés biologiques ?

Les impacts des contaminants à l’échelle des organismes / populations, même non létaux, sont susceptibles de modifier la diversité et l’abondance relative des espèces au sein des communautés. Au-delà de ses effets directs, la résultante de la contamination peut être fortement influencée par des effets indirects, liés à la modulation des interactions biotiques (compétition, prédation…) au sein des communautés.

Ces aspects seront notamment étudiés expérimentalement au travers des communautés de microorganismes (diatomées, bactéries…) qui, outre leur importance dans de nombreux processus écosystémiques, permettent des études à des échelles spatiales et temporelles compatibles avec des approches en laboratoire croisant de nombreux facteurs et impliquant un fort niveau de réplication. Ces approches seront replacées dans le cadre théorique de l’écologie des communautés, en nous appuyant notamment sur les modèles conceptuels intégrant les traits de réponse des organismes aux stress et aux perturbations.

Nous appréhenderons également l’impact des contaminants sur les communautés biologiques in situ, dans le cadre des chantiers d’étude in natura dans lesquels l’équipe ECI sera impliquée. Ces approches concerneront notamment les biofilms phototrophes en milieu aquatique, permettant ainsi de faire le lien avec les études expérimentales au laboratoire.

3) Quelles sont les conséquences fonctionnelles de la contamination chimique à l’échelle des écosystèmes ?

Les approches in natura permettent potentiellement d’appréhender l’impact d’une contamination sur les fonctions écosystémiques. Toutefois, il est nécessaire pour cela de disposer d’indicateurs de l’intégrité / altération fonctionnelle des écosystèmes.

La complexité de ces systèmes (et/ou des cocktails de contaminants en jeu) nécessite que ces indicateurs soient utilisables dans le cadre d’un aller-retour entre milieu naturel et conditions contrôlées. En outre, la prévision de l’impact de contaminants émergents (tels que les nanomatériaux), offrant par définition peu de possibilités d’étudier des situations de contamination in natura, implique le développement d’outils de bioindication et de compréhension des mécanismes qui soient utilisables au laboratoire ou en mésocosmse.

Nous construirons ces outils de manière à examiner les conséquences fonctionnelles des impacts sur les organismes (micro-organismes, plantes et métazoaires), en termes de processus d’importance écosystémique : les processus de bioturbation, de production primaire et de décomposition de la matière organique.

Composition

Responsable : Camille LARUE (CR CNRS)

Personnels permanents :

BARRET Maïalen, MCF, INPT
ELGER Arnaud, MCF, HDR, UPS
GAUTHIER Laury, MCF, HDR, UPS
JEAN-DUPUY Séverine, MCF, INPT
KALLERHOFF Jean, PR, HDR, INPT
LAPLANCHE Christophe, MCF, INPT
LARUE Camille, CR, HDR, CNRS
PINELLI Eric, PR, HDR, INPT
POURRUT Bertrand, CR, INPT
BERSEILLE Olivier, TEC, INPT
MOUCHET Florence, IR CDI, CNRS
RILOVA Elodie, AI, CNRS
SILVESTRE Jérôme, IR, HDR, INPT, Resp. serre et phytotrons

Personnels non permanents :

BRAYLE Paul, doctorant
BOULY Lucie, postdoctorante
de BETTIGNIES Thibaut, chargé de mission scientifique détaché (PatriNat)
CHEOUX-DAMAS Victor, postdoctorant
FIRMIN Antoine, doctorant
LEROY Mathieu, doctorant
MARIN Sara, IR détachée (BoisValor)
MORENO BAYONA Diana Alejandra, doctorante
NGUYEN Van Xuan, postdoctorant
ROBINSON Christophe, doctorant
THIBODEAU Alexandre, doctorant
SIMION Josselin, doctorant
SONTAG Mélissa, TEC, INPT
VANALDERWEIRELDT Lucie, postdoctorante

Publications

2022:

Al Souki KS, Liné C, Moravec J, Douay F, Pourrut B. (2022) Response of Three Miscanthus × giganteus Cultivars to Toxic Elements Stress: Part 2, Comparison between Two Growing Seasons. Plants (Basel). 11(7):945. doi: 10.3390/plants11070945

Côte J, Jacquin L, Veyssière C, Manzi S, Etienne R, Perrault A, Cambon MC, Jean S, White J. (2022) Changes in fish skin microbiota along gradients of eutrophication in human-altered rivers. FEMS Microbiol Ecol. 98(1):fiac006. doi: 10.1093/femsec/fiac006

Durango-Cordero J, Saqalli M, Ferrant S, Bonilla S, Maurice L, Arellano P, Elger A. (2022) Risk assessment of unlined oil pits leaking into groundwater in the Ecuadorian Amazon: A modified GIS-DRASTIC approach. Applied Geography 139: 102628. doi: 10.1016/j.apgeog.2021.102628

Ezzariai A, An-Nori A, El Fels L, Riboul D, Merlina G, Barret M, Lacroix MZ, El Mejahed K, El Gharous M, Bousquet-Melou A, Kouisni L, Patureau D, Pinelli E, Hafidi M. (2022) Combining sequential extraction and 3D fluorescence to investigate the behavior of antibiotic and polycyclic aromatic hydrocarbons during solar drying of sewage sludge. Chemosphere 17:134293. doi: 10.1016/j.chemosphere.2022.134293.

Ezzariai A, Pinelli E, El Fels L, Merlina G, Riboul D, Khadra A, Barret M, Jimenez J, Lacroix M, Kouisni L. (2022) Sequential removal of human antibiotics as a function of the dynamic of organic matter fractions and 3D fluorescence during sludge composting. Journal of Environmental Chamical Engineering 10(3): 107956. doi: 10.1016/j.jece.2022.107956

Firmin A, Selosse MA, Dunand C, Elger A. (2022) Mixotrophy in aquatic plants, an overlooked ability. Trends Plant Sci. 27(2):147-157. doi: 10.1016/j.tplants.2021.08.011.

Gimenez R, Lassalle G, Elger A, Dubucq D, Credoz A, Fabre S. (2022) Mapping plant species in a former industrial site using airborne hyperspectral and time series of Sentinel-2 data sets. Remote Sensing 14(15): 3633. doi: /10.3390/rs14153633.

Hamard S, Céréghino R, Barret M, Sytiuk A, Lara E, Dorrepaal E, Kardol P, Küttim M, Lamentowicz M, Leflaive J, Le Roux G, Tuittila ES, Jassey VEJ. (2022) Contribution of microbial photosynthesis to peatland carbon uptake along a latitudinal gradient. Journal of Ecology 109(9): 3424-3441. doi: 10.1111/1365-2745.13732

Leroy M, Pey B, Jassey VEJ, Liné C, Elger A, Probst A, Flahaut E, Silvestre J, Larue C. (2022) Interactive effects of metals and carbon nanotubes in a microcosm agrosystem. J Hazard Mater. 5;431:128613. doi: 10.1016/j.jhazmat.2022.128613

Mikajlo I, Pourrut B, Louvel B, Hynšt J, Záhora J. (2022) Plant-soil nitrogen, carbon and phosphorus content after the addition of biochar, bacterial inoculums and nitrogen fertilizer. Journal of Plant Nutrition. doi: 10.1080/01904167.2022.2043369

Monchanin C, Gabriela de Brito Sanchez M, Lecouvreur L, Boidard O, Méry G, Silvestre J, Le Roux G, Baqué D, Elger A, Barron AB, Lihoreau M, Devaud JM. (2022) Honey bees cannot sense harmful concentrations of metal pollutants in food. Chemosphere 297:134089. doi: 10.1016/j.chemosphere.2022.134089.

Mouchet F , Rowenczyk L, Minet A, Clergeaud F, Silvestre J, Pinelli E, Ferriol J, Leflaive J, Ten-Hage L, Gigault J, Ter Halle A, Gauthier L. (2022) Ecotoxicity of Heteroaggregates of Polystyrene Nanospheres in Chironomidae and Amphibian. Nanomaterials 12(15):2730. doi: 10.3390/nano12152730.

Roubeau Dumont E, Elger A, Azéma C, Castillo Michel H, Surble S, Larue C. (2022) Cutting-edge spectroscopy techniques highlight toxicity mechanisms of copper oxide nanoparticles in the aquatic plant Myriophyllum spicatum. Sci Total Environ. 803:150001. doi: 10.1016/j.scitotenv.2021.150001

Sytiuk A, Céréghino R, Hamard S, Delarue F, Dorrepaal E, Küttim M, Lamentowicz M, Pourrut B, Robroek BJM, Tuittila ES, Jassey VEJ. (2022) Biochemical traits enhance the trait concept in Sphagnum ecology. OIKOS 4: e09119. doi: 10.1111/oik.09119

2021 :

Allen J, Gross EM, Courcoul C, Bouletreau S, Compin A, Elger A, Ferriol J, Hilt S, Jassey VEJ, Laviale M, Polst BH, Schmitt-Jansen M, Stibor H, Vijayaraj V, Leflaive J. (2021) Disentangling the direct and indirect effects of agricultural runoff on freshwater ecosystems subject to global warming: A microcosm study.

Water Res. 190:116713. doi: 10.1016/j.watres.2020.116713.

Al Souki KS, Liné C, Douay F, Pourrut B. (2021) Response of Three Miscanthus × giganteus Cultivars to Toxic Elements Stress: Part 1, Plant Defence Mechanisms. Plants (Basel). 10(10):2035. doi: 10.3390/plants10102035.

Evariste L, Braylé P, Mouchet F, Silvestre J, Gauthier L, Flahaut E, Pinelli E, Barret M. (2021) Graphene-Based Nanomaterials Modulate Internal Biofilm Interactions and Microbial Diversity. Front Microbiol. 12:623853. doi: 10.3389/fmicb.2021.623853.

Evariste L, Flahaut E, Baratange C, Barret M, Mouchet F, Pinelli E, Galibert AM, Soula B, Gauthier L. (2021) Ecotoxicological assessment of commercial boron nitride nanotubes toward Xenopus laevis tadpoles and host-associated gut microbiota. Nanotoxicology 15(1):35-51. doi: 10.1080/17435390.2020.1839137.

Evariste L, Mottier A, Pinelli E, Flahaut E, Gauthier L, Mouchet F. (2021) Graphene oxide and reduced graphene oxide promote the effects of exogenous T3 thyroid hormone in the amphibian Xenopus laevis. Chemosphere 281:130901. doi: 10.1016/j.chemosphere

Khan MS, Riaz N, Shaikh AJ, Shah JA, Hussain J, Irshad M, Awan MS, Syed A, Kallerhoff J, Arshad M, Bilal M. (2021) Graphene quantum dot and iron co-doped TiO₂ photocatalysts: Synthesis, performance evaluation and phytotoxicity studies. Ecotoxicol Environ Saf. 226:112855. doi: 10.1016/j.ecoenv.2021.112855.

Larue C, Sarret G, Castillo-Michel H, Pradas Del Real AE. (2021) A Critical Review on the Impacts of Nanoplastics and Microplastics on Aquatic and Terrestrial Photosynthetic Organisms. Small. 17(20):e2005834. doi: 10.1002/smll.202005834.

Lassalle G, Fabre S, Credoz A, Hédacq R, Dubucq D, Elger A. (2021) Mapping leaf metal content over industrial brownfields using airborne hyperspectral imaging and optimized vegetation indices. Sci Rep. 11(1):2. doi: 10.1038/s41598-020-79439-z.

Lavergne C, Aguilar-Muñoz P, Calle N, Thalasso F, Astorga-España MS, Sepulveda-Jauregui A, Martinez-Cruz K, Gandois L, Mansilla A, Chamy R, Barret M, Cabrol L. (2021) Temperature differently affected methanogenic pathways and microbial communities in sub-Antarctic freshwater ecosystems. Environ Int. 154:106575. doi: 10.1016/j.envint.2021.106575.

Liné C, Manent F, Wolinski A, Flahaut E, Larue C. (2021) Comparative study of response of four crop species exposed to carbon nanotube contamination in soil. Chemosphere. 274:129854. doi: 10.1016/j.chemosphere.2021.129854.

Manzoor M, Gul I, Manzoor A, Kallerhoff J, Arshad M. (2021) Optimization of integrated phytoremediation system (IPS) for enhanced lead removal and restoration of soil microbial activities. Chemosphere. 277:130243. doi: 10.1016/j.chemosphere.2021.130243.

Monchanin C, Blanc-Brude A, Drujont E, Negahi MM, Pasquaretta C, Silvestre J, Baqué D, Elger A, Barron AB, Devaud JM, Lihoreau M. (2021) Chronic exposure to trace lead impairs honey bee learning.

Ecotoxicol Environ Saf. 212:112008. doi: 10.1016/j.ecoenv.2021.112008.

Nsanganwimana F, Al Souki KS, Waterlot C, Douay F, Pelfrêne A, Ridošková A, Louvel B, Pourrut B. (2021) Potentials of Miscanthus x giganteus for phytostabilization of trace element-contaminated soils: Ex situ experiment. Ecotoxicol Environ Saf. 214:112125. doi: 10.1016/j.ecoenv.2021.112125

Petitjean Q, Jacquin L, LeHénaff M, Perrault A, Cousseau M, Laffaille P, Jean S. (2021) Dose- and time-dependent effects of an immune challenge on fish across biological levels. J Exp Zool A Ecol Integr Physiol. 335(2):250-264. doi: 10.1002/jez.2430.

Petitjean Q, Jacquin L, Riem L, Pitout M, Perrault A, Cousseau M, Laffaille P, Jean S. (2021) Intraspecific variability of responses to combined metal contamination and immune challenge among wild fish populations. Environ Pollut. 272:116042. doi: 10.1016/j.envpol.2020.116042.

Rowenczyk L, Leflaive J, Clergeaud F, Minet A, Ferriol J, Gauthier L, Gigault J, Mouchet F, Ory D, Pinelli E, Albignac M, Roux C, Mingotaud AF, Silvestre J, Ten-Hage L, Ter Halle A. (2021) Heteroaggregates of Polystyrene Nanospheres and Organic Matter: Preparation, Characterization and Evaluation of Their Toxicity to Algae in Environmentally Relevant Conditions. Nanomaterials (Basel) 11(2):482. doi: 10.3390/nano11020482.

2020 :

Acolas, M.-L., Davail, B., Gonzalez, P., Jean, S., Clerandeau, C., Morin, B., Gourves, P.-Y., Daffe, G., Labadie, P., Perrault, A., lauzent, M., Pierre, M., Le Barh, R., Baudrimont, M., Peluhet, L., Le Menach, K., Budzinski, H., Rochard, E., Cachot, J. (2020) Health indicators and contaminant levels of a critically endangered species in the Gironde estuary, the European sturgeon. Environmental Science and Pollution Research 27, 3726–3745.
Al Souki, K.S., Line, C., Louvel, B., Waterlot, C., Douay, F., Pourrut, B. (2020) Miscanthus x giganteus culture on soils highly contaminated by metals: Modelling leaf decomposition impact on metal mobility and bioavailability in the soil-plant system. Ecotoxicology and Environmental Safety 199, 110654.
Allen, J., Gross, E.M., Courcoul, C., Bouletreau, S., Compin, A., Elger, A., Ferriol, J., Hilt, S., Jassey, V.E.J., Laviale, M., Polst, B.H., Schmitt-Jansen, M., Stibor, H., Vijayaraj, V. & Leflaive, J. (2020) Disentangling the direct and indirect effects of agricultural runoff on freshwater ecosystems subject to global warming: A microcosm study. Water Research (in press).
Arshad, M., Naqvi, N., Gul, I., Yaqoob, K., Bilal, M., Kallerhoff, J. (2020) Lead phytoextraction by Pelargoniumhortorum: Comparative assessment of EDTA and DIPA for Pb mobility and toxicity. Science of the Total Environment 748, 141496.
Cabrol, L., Thalasso, F. Gandois, L., Sepulveda-Jauregui, A., Martinez-Cruz, K., Teisserenc, R., Tananaev, N., Tveit, A., Svenning, M.M. & Barret, M. (2020) Anaerobic Oxidation of Methane and Associated Microbiome in Anoxic Water of Northwestern Siberian Lakes. Science of The Total Environment 736, 139588.
Escudero, V., Abreu, I., del Sastre, E., Tejada-Jimenez, M., Larue, C., Novoa-Aponte, L., Castillo-Gonzalez, J., Wen, J., Mysore, K.S., Abadia, J., Arguello, J.M., Castillo-Michel, H., Alvarez-Fernandez, A., Imperial, J., Gonzalez-Guerrero, M. (2020) Nicotianamine Synthase 2 Is Required for Symbiotic Nitrogen Fixation in Medicago truncatula Nodules. Frontiers in Plant Science 10, 1780.
Escudero, V., Abreu, I., Tejada-Jimenez, M., Rosa-Nunez, E., Quintana, J., Isabel Prieto, R., Larue, C., Wen, J., Villanova, J., Mysore, K.S., Arguello, J.M., Castillo-Michel, H., Imperial, J., Gonzalez-Guerrero, M. (2020) Medicago truncatula Ferroportin2 mediates iron import into nodule symbiosomes. New Phytologist 228, 194–209.
Espel, D., Courty, S., Auda, Y. Sheeren, D. & Elger, A. (2020) Submerged macrophyte assessment in rivers: an automatic mapping method using Pléiades imagery. Water Research 186, 116353.
Evariste, L., Flahaut, E., Baratange, C., Barret, M., Mouchet, F., Pinelli, E., Galibert, A.M., Soula, B. & Gauthier, L. (2020) Ecotoxicological Assessment of Commercial Boron Nitride Nanotubes toward Xenopus Laevis Tadpoles and Host-Associated Gut Microbiota. Nanotoxicology, 10 November 2020, 1–17.
Evariste, L., Mottier, A., Lagier, L., Cadarsi, S., Barret, M., Sarrieu, C., Soula, B., Mouchet, F., Flahaut, E., Pinelli, E., Gauthier, L. (2020) Assessment of graphene oxide ecotoxicity at several trophic levels using aquatic microcosms. Carbon 156, 261–271.
Fabre, S., Gimenez, R., Elger, A., Riviere, T. (2020) Unsupervised Monitoring Vegetation after the Closure of an Ore Processing Site with Multi-Temporal Optical Remote Sensing. Sensors 20, 4800.
Gul, I., Manzoor, M., Kallerhoff, J., Arshad, M. (2020) Enhanced phytoremediation of lead by soil applied organic and inorganic amendments: Pb phytoavailability, accumulation and metal recovery. Chemosphere 258, 127405.
Jacquin, L., Petitjean, Q., Cote, J., Laffaille, P., Jean, S. (2020) Effects of Pollution on Fish Behavior, Personality, and Cognition: Some Research Perspectives. Frontiers in Ecology and Evolution 8, 86.
Lassalle, G., Fabre, S., Credoz, A., Dubucq, D., Elger, A. (2020) Monitoring oil contamination in vegetated areas with optical remote sensing: A comprehensive review. Journal of Hazardous Materials 393, 122427.
Lassalle, G., Fabre, S., Credoz, A., Hédacq, R., Dubucqd, D. & Elger, A. (2020) Mapping leaf metal content over industrial brownfields using airborne hyperspectral imaging and optimized vegetation indices. Scientific reports (in press).
Manzoor, M., Gul, I., Manzoor, A., Kamboh, U.R., Hina, K., Kallerhoff, J., Arshad, M. (2020) Lead availability and phytoextraction in the rhizosphere of Pelargonium species. Environmental Science and Pollution Research 27, 39753–39762.
Petitjean, Q., Jacquin, L., LeHénaff, M., Perrault, A., Cousseau, M., Laffaille, P., Jean, S., 2020. Dose- and time-dependent effects of an immune challenge on fish across biological levels. J. Exp. Zool. Part Ecol. Integr. Physiol. (in press).
Petitjean, Q., Jacquin, L., Riem, L., Pitout, M., Perrault, A., Cousseau, M., Laffaille, P., Jean, S., 2020. Intraspecific variability of responses to combined metal contamination and immune challenge among wild fish populations. Environ. Pollut. (in press).
Petitjean, Q., Jean, S., Cote, J., Lamarins, A., Lefranc, M., Santos, R., Perrault, A., Laffaille, P., Jacquin, L. (2020) Combined effects of temperature increase and immune challenge in two wild gudgeon populations. Fish Physiology and Biochemistry 46, 157–176.
Petitjean, Q., Jean, S., Cote, J., Larcher, T., Angelier, F., Ribout, C., Perrault, A., Laffaille, P., Jacquin, L. (2020) Direct and indirect effects of multiple environmental stressors on fish health in human-altered rivers. Science of the Total Environment 742, 140657.
Pfeiffer, M., Padarian, J., Osorio, R., Bustamante, N., Federico Olmedo, G., Guevara, M., Aburto, F., Albornoz, F., Antilen, M., Araya, E., Arellano, E., Barret, M., Barrera, J., Boeckx, P., Briceno, M., Bunning, S., Cabrol, L., Casanova, M., Cornejo, P., Corradini, F., Curaqueo, G., Doetterl, S., Duran, P., Escudey, M., Espinoza, A., Francke, S., Pablo Fuentes, J., Fuentes, M., Gajardo, G., Garcia, R., Gallaud, A., Galleguillos, M., Gomez, A., Hidalgo, M., Ivelic-Saez, J., Mashalaba, L., Matus, F., Meza, F., de la Luz Mora, M., Mora, J., Munoz, C., Norambuena, P., Olivera, C., Ovalle, C., Panichini, M., Pauchard, A., Perez-Quezada, J.F., Radic, S., Ramirez, J., Riveras, N., Ruiz, G., Salazar, O., Salgado, I., Seguel, O., Sepulveda, M., Sierra, C., Tapia, Y., Tapia, F., Toledo, B., Miguel Torrico, J., Valle, S., Vargas, R., Wolff, M., Zagal, E. (2020) CHLSOC: the Chilean Soil Organic Carbon database, a multi-institutional collaborative effort. Earth System Science Data 12, 457–468.
Roubeau Dumont, E., Larue, C., Michel, H.C., Gryta, H., Line, C., Baque, D., Gross, E.M., Elger, A. (2020) Genotypes of the aquatic plant Myriophyllum spicatum with different growth strategies show contrasting sensitivities to copper contamination. Chemosphere 245, 125552.
Shahid, M., Niazi, N.K., Rinklebe, J., Bundschuh, J., Dumat, C., Pinelli, E. (2020) Trace elements-induced phytohormesis: A critical review and mechanistic interpretation. Critical Reviews in Environmental Science and Technology 50, 1984–2015.
Suescún, A.V., Martinez-Cruz, K., Barret, M. & Cárdenas, L. (2020) Metabarcoding for Bacterial Diversity Assessment: Looking inside Didymosphenia Geminata Mats in Patagonian Aquatic Ecosystems. Aquatic Invasions (in press).
Thalasso, F., Sepulveda-Jauregui, A., Gandois, L., Martinez-Cruz, K., Gerardo-Nieto, O., Astorga-Espana, M.S., Teisserenc, R., Lavergne, C., Tananaev, N., Barret, M., Cabrol, L. (2020) Sub-oxycline methane oxidation can fully uptake CH4 produced in sediments: case study of a lake in Siberia. Scientific Reports 10, 3423.

2019 :

Acolas ML., Davail B., Gonzalez P., Jean S., Clérandeau C., Morin B., Gourves P.Y., Daffe G., Labadie P., Perrault A., Lauzent M., Pierre M., Le Barh R., Baudrimont M., Peluhet L., Le Menach K., Budzinski H., Rochard E., Cachot J., Acolas ML. (2019) Health indicators and contaminant levels of a critically endangered species in the Gironde estuary, the European sturgeon. Accepted in Environmental Science and Pollution Research.
Bakshi, M., Liné, C., Bedolla, D.E., Stein, R.J., Kaegi, R., Sarret, G., Pradas del Real, A.E., Castillo-Michel, H., Abhilash, P.C., Larue, C. (2019) Assessing the impacts of sewage sludge amendment containing nano-TiO2 on tomato plants: a life cycle study. Journal of Hazardous Materials 369: 191-198.
Chamsi O, Pinelli E, Faucon B, Perrault A, Lacroix L, Sánchez-Pérez JM, Charcosset JY. (2019) Effects of herbicide mixtures on freshwater microalgae with the potential effect of a safener. International Journal of Limnology. 55; 1-9.
Durango-Cordero, J., Saqalli, M., Parra, R. & Elger, A. (2019) Spatial inventory of selected atmospheric emissions from oil industry in Ecuadorian Amazon: insights from comparisons among satellite and institutional datasets. Safety Science 120, 107-116.
Espel, D., Diepens, N.J., Boutron, O., Buffan-Dubau, E., Cherain, Y., Coulet, E., Grillas, P., Probst, A., Silvestre, J. & Elger, A. (2019) Dynamics of the seagrass Zostera noltei in a shallow Mediterranean lagoon exposed to chemical contamination and other stressors. Estuarine, Coastal and Shelf Science 222, 1-12.
Evariste L, Barret M, Mottier A, Mouchet M, Gauthier L, Pinelli E. (2019). Gut microbiota of aquatic organisms: A key endpoint for ecotoxicological studies. Environmental Pollution. 248, 989-999.
Evariste, L., Lagier, L., Gonzalez, P., Mottier, A., Mouchet, F., Cadarsi, S., Lonchambon, P., Daffe, G., Chimowa, G., Sarrieu, C., Ompraret, E., Galibert, AM., Matei Ghimbeu, C., Pinelli, E., Flahaut, E. & Gauthier, L. (2019). Thermal reduction of Graphene Oxide mitigates its in vivo Genotoxicity toward Xenopus laevis tadpoles. Nanomaterials, 9(4) 584 – 600. 10.3390/nano9040584
Garacci, M., Barret, M., Folgoas, C., Flahaut, E., Chimowa, G., Bertucci, A., Gonzalez, P., Silvestre, J., Gauthier, L., Zouine, M. & Pinelli, E. (2019). Transcriptomic response of the benthic freshwater diatom Nitzschia palea exposed to Few Layer Graphene. Environmental Science nano. 10.1039/C8EN00987B
Gul, I., Manzoor, M., Hashim, N. R., Yagoob, K., Kallerhoff, J. and Arshad, M. (2019). Comparative effectiveness of organic and inorganic amendments on cadmium bioavailability and uptake by Pelargonium hortorum. Journal of Soils and Sediments: 1-11. 10.1007/s11368-018-2202-1.
Gul, I., Manzoor, M., Silvestre, J., Rizman, M., Hina, K., Kallerhoff, J. and Arshad, M. (2019). EDTA-assisted phytoextraction of lead and cadmium by Pelargonium cultivars grown on spiked soil. International Journal of Phytoremediation 21(2): 101-110. 10.1080/15226514.2018.1474441
Hansson S V., Grusson Y., Chimienti M., Claustres A., Jean S., Le Roux G. (2019) Legacy Pb pollution in the contemporary environment and its potential bioavailability in three mountain catchments. Science of the total environment 671, 1227-1236.
Houssou, N.L.J., Durango Cordero, J., Bouadjio-Boulic, A., Morin, L., Maestripieri, N., Ferrant, S., Belem, M., Peláez, J.I., Saenz, M., Lerigoleur, E., Paegelow, M., Mena, C.F., Elger, A., Gaudou, B., Maurice, L. & Saqalli, M. (2019) Synchronizing exposure and demography: the construction of an agent-based model of the Ecuadorian Amazon colonization and exposure to oil pollution hazards. JASSS – The Journal of Artificial Societies and Social Simulation 22, 1.
Jacquin L., Gandar A., Aguirre-Smith M., Perrault A., Le Hénaff M., De Jong L., Paris-Palacios S., Laffaille P., Jean S. (2019) High temperature aggravates the effects of pesticides in goldfish. Ecotoxicol Environ Saf. 172 : 255- 264.
Khadra A, Ezzariai A, Merlina G, Capdeville MJ, Budzinski H, Hamdi H, Pinelli E, Hafidi M. (2019). Fate of antibiotics present in a primary sludge of WWTP during their co-composting with palm wastes. Waste Management 84, 13-19.
Laplanche, C., Leunda, P. M., Boithias, L., Ardaiz, & Juanes, F. (2019). Advantages and insights from a hierarchical Bayesian growth and dynamics model based on salmonids electrofishing removal data. Ecological modelling 392: 8-21.
Lassalle, G., Fabre, S., Credoz, A., Hedacq, R., Borderies, P., Bertoni, G., Erudel, T., Buffan-Dubau, E., Dubucq, D. and Elger, A. (2019). Detection and discrimination of various oil-contaminated soils using vegetation reflectance. Science of the Total Environment 655: 1113-1124.
Lassalle, G., Elger, A., Credoz, A., Hédacq, R., Bertoni, G., Dubucq, D. & Fabre, S. (2019) Toward quantifying oil contamination in vegetated areas using very high spatial and spectral resolution imagery. Remote Sensing 11, 2241.
Lassalle, G., Fabre, S., Credoz, A., Hédacq, R., Bertoni, G., Dubucq, D. & Elger, A. (2019) Estimating persistent oil contamination in tropical region using vegetation indices and Random Forest regression. Ecotoxicology and Environmental Safety 184, 109654.
Lassalle, G., Fabre, S. Credoz, A., Hédacq, R., Bertoni, G., Dubucq, D. & Elger, A. (2019) Application of PROSPECT for estimating Total Petroleum Hydrocarbons in contaminated soils from leaf optical properties. Journal of Hazardous Materials 377, 409-417.
Manzoor, M., Gul, I., Ahmed, I., Zeeshan, M., Hashmi, I., Zafar Amin, B.A., Kallerhoff, J. & Arshad, M. (2019) Metal tolerant bacteria enhanced phytoextraction of lead by two accumulator ornamental species. Chemosphere 227, 561-569.
Pey, B., Tran, C., Cruz, P., Hedde, M., Jouany, C., Laplanche, C., Nahmani, J., Chauvet, E. and Lecerf, A. (2019). Nutritive value and physical and chemical deterrents of forage grass litter explain feeding performances of two soil macrodetritivores. Applied Soil Ecology 133: 81-88.
Rafique , R, Zahra Z, Virk N, Shahid M, Pinelli E, Kallerhoff J, Jung Park T and Arshad T (2019) Data on rhizosphere pH, phosphorus uptake and wheat growth responses upon TiO2nanoparticles application, Data in Brief, 17, Pages 890-896.
Roubeau Dumont, E., Larue, C., Lorber, S., Gryta, H., Billoir, E., Gross, E.M. & Elger, A. (2019) Does intraspecific variability matter in ecological risk assessment? Investigation of genotypic variations in three macrophyte species exposed to copper. Aquatic Toxicology 211, 29-37. DOI: 10.1016/j.aquatox.2019.03.012
Roubeau Dumont, E., Larue, C., Pujol, B., Lamaze, T. & Elger, A. (2019) Environmental variations mediate duckweed (Lemna minor L.) sensitivity to copper exposure through phenotypic plasticity. Environmental Science and Pollution Research.

2018 :

Hoang, T.K., Probst, A., Orange, D., Gilbert, F., Elger, A., Kallerhoff, J., Laurent, F., Bassil, S., Duong, T.T. & Gerino M. (2018) Bioturbation effects on bioaccumulation of cadmium in the wetland plant Typha latifolia: A nature-based experiment.Science of the Total Environment 618, 1284-1297.
Larue, C., Baratange, C., Flank, A.M., Khodja, H., Surblé, S., Elger, A. & Carrière, M. (2018) Influence of soil type on TiO₂ nanoparticle fate in an agro-ecosystem.Science of The Total Environment 630, 609-617.
Lassalle, G., Credoz, A., Hédacq, R. Fabre, S., Dubucq, D. & Elger, A. (2018) Assessing soil contamination due to oil and gas production using vegetation hyperspectral reflectance.Environmental Science and Technology 52, 1756-1764.
O’Hare, M.T., Aguiar, F.C., Asaeda, T., Bakker, E.S., Chambers, P.A., Clayton, J., Elger, A., Ferreira, T.M., Gross, E.M., Gunn, I.D.M., Gurnell, A.M., Hellsten, S., Hofstra, D.E., Li, W., Mohr, S., Puijalon, S., Szoszkiewicz, K., Willby, N. & Wood K.A. (2018) Plants in aquatic ecosystems: current trends and future directions. Hydrobiologia 812, 1-11.
Rafique, R., Zahra, Z., Virk, N., Shahid, M., Pinelli, E., Park, T.J., Kallerhoff, J., Arshad, M. (2018) Dose-dependent physiological responses of Triticum aestivum L. to soil applied TiO 2 nanoparticles: Alterations in chlorophyll content, H₂O₂ production, and genotoxicity. Agric. Ecosyst. Environ. 255, 95–101.

2017 :

Abreu, I., Saéz, Á., Castro-Rodríguez, R., Escudero, V., Rodríguez-Haas, B., Senovilla, M., Larue, C., Grolimund, D., Tejada-Jiménez, M., Imperial, J., González-Guerrero, M. (2017) Medicago truncatula Zinc-Iron Permease6 provides zinc to rhizobia-infected nodule cells. Plant. Cell Environ. 40, 2706–2719.
Bour, A., Mouchet, F., Cadarsi, S., Silvestre, J., Baqué, D., Gauthier, L., Pinelli, E. (2017) CeO₂ nanoparticle fate in environmental conditions and toxicity on a freshwater predator species: a microcosm study. Environ. Sci. Pollut. Res. 24, 17081–17089.
Castillo-Michel, H.A., Larue, C., Pradas del Real, A.E., Cotte, M., Sarret, G. (2017) Practical review on the use of synchrotron based micro- and nano- X-ray fluorescence mapping and X-ray absorption spectroscopy to investigate the interactions between plants and engineered nanomaterials. Plant Physiol. Biochem. 110, 13–32.
Comin, F.A., Sánchez-Pérez, J.M., Español, C., Carranza, F., Sauvage, S., Antiguedad, I., Zabaleta, A., Martinez-Santos, M., Gerino, M., Yao, J.M., Bodoque, J.M., Ladera, J., Yela, J.L., Teissier, S., Bernard-Jannin, L., Sun, X., Navarro, E., Pinelli, E., Chamsi, O., Neves, R., Brito, D., Ruiz, E., Uriarte, J., Jiménez, J.J., García, M., Barcos, A., Sorando, R. (2017) Floodplain capacity to depollute water in relation to the structure of biological communities. Ecol. Eng. 103, 301–314.
Diepens N., Buffan-Dubau E., Budzinski H., Kallerhoff J. Merlina G. Silvestre J., Auby I. Tapie I. and Elger A. (2017) Toxicity effects of an environmental realistic herbicide mixture on the seagrass Zostera noltei.Environmental Pollution222, 393-403.
Ezzariai, A., Barret, M., Merlina, G., Pinelli, E., Hafidi, M. (2017) Evaluation of the antibiotics effects on the physical and chemical parameters during the co-composting of sewage sludge with palm wastes in a bioreactor. Waste Manag. 68, 388–397.
Gandar, A., Laffaille, P., Canlet, C., Tremblay-Franco, M., Gautier, R., Perrault, A., Gress, L., Mormède, P., Tapie, N., Budzinski, H., Jean, S. (2017) Adaptive response under multiple stress exposure in fish: From the molecular to individual level.Chemosphere188, 60–72.
Gandar, A., Laffaille, P., Marty-Gasset, N., Viala, D., Molette, C., Jean, S. (2017) Proteome response of fish under multiple stress exposure: Effects of pesticide mixtures and temperature increase.Aquat. Toxicol.184, 61–77.
Garacci M, Barret M, Mouchet F, Sarrieu C, Lonchambon P, Flahaut E, Gauthier L, Silvestre J, and Pinelli E. (2017) Few Layer Graphene sticking by biofilm of freshwater diatom Nitzschia palea as a mitigation to its ecotoxicity.Carbon113, 139-150.
Hansson, S.V., Sonke, J., Galop, D., Bareille, G., Jean, S., Le Roux, G. (2017) Transfer of marine mercury to mountain lakes. Sci Rep. 7:12719.
Joachim, S., Roussel, H., Bonzom, J.-M., Thybaud, E., Mebane, C.A., Van den Brink, P., Gauthier, L. (2017) A long-term copper exposure in a freshwater ecosystem using lotic mesocosms: Invertebrate community responses. Environ. Toxicol. Chem. 36, 2698–2714.
Lagier, L., Mouchet, F., Laplanche, C., Mottier, A., Cadarsi, S., Evariste, L., Sarrieu, C., Lonchambon, P., Pinelli, E., Flahaut, E., Gauthier, L. (2017) Surface area of carbon-based nanoparticles prevails on dispersion for growth inhibition in amphibians. Carbon N. Y. 119, 72–81.
Liné C, Larue C, Flahaut E. (2017) Carbon nanotubes: impacts and behavior in terrestrial ecosystem – A review. Carbon 123, 767-785.
Mottier A, Mouchet F, Pinelli E, Gauthier L, Flahaut E (2017) Environmental impact of engineered carbon nanoparticles: from releases to effects on the aquatic biota.Current Opinion in Biotechnology46, 1-6.
Sinclair, S.A., Larue, C., Bonk, L., Khan, A., Castillo-Michel, H., Stein, R.J., Grolimund, D., Begerow, D., Neumann, U., Haydon, M.J., Krämer, U. (2017) Etiolated Seedling Development Requires Repression of Photomorphogenesis by a Small Cell-Wall-Derived Dark Signal. Curr. Biol. 27, 3403–3418.e7.

Chapitre de livre :

Gauthier L and Mouchet F. (2017) Genotoxicity in urodele amphibians Pleurodeles waltl and Ambystoma mexicanum (Lissamphibia, Caudata) exposed to freshwater pollutants: a historical view. In Ecotoxicology and Genotoxicology: Non-traditional Aquatic Models, Issues in Toxicology. Chapt 15. Royal Society of Chemistry, Cambridge, UK, Ed. Marcelo L. Larramendy, pp 347-370

2016 :

Arshad M, Merlina G, Uzu G, Sobanska S, Sarret G, Dumat C, Silvestre J, Pinelli E, Kallerhoff J. (2016) Phytoavailability of lead altered by two Pelargonium cultivars grown on contrasting lead-spiked soils. Journal of Soils and Sediments 16 (2), 581-591.
Austruy, A., Laplanche, C., Mombo, S., Dumat, C., Deola, F., Gers, C. (2016) Ecological changes in historically polluted soils: Metal(loid) bioaccumulation in microarthropods and their impact on community structure. Geoderma 271, 181–190.
Bour A, Mouchet F, Cadarsi S, Silvestre J, Baqué D, Chauvet E, Bonzom JM, Pagnout C, Clivot H, Gauthier L, Pinelli E. (2016) Impact of CeO2 nanoparticles on the functions of freshwater ecosystems: a microcosm study. Environmental Science-Nano 3, 830-838.
Bour A, Mouchet F, Cadarsi S, Silvestre J, Verneuil L, Baqué D, Chauvet E, Bonzom JM, Pagnout C, Clivot H, Fourquaux I, Tella M, Auffan M, Gauthier L, Pinelli E. (2016) Toxicity of CeO2 nanoparticles on a freshwater experimental trophic chain: A study in environmentally relevant conditions through the use of mesocosms. Nanotoxicology 10 (2), 245-255.
Devault, D.A., Laplanche, C., Pascaline, H., Bristeau, S., Mouvet, C., Macarie, H. (2016) Natural transformation of chlordecone into 5b-hydrochlordecone in French West Indies soils: statistical evidence for investigating long-term persistence of organic pollutants. Environ. Sci. Pollut. Res. 23, 81–97.
El Azzi, D., Probst, J.L., Teisserenc, R., Merlina, G., Baqué, D., Julien, F., Payre-Suc, V., Guiresse, M. (2016) Trace Element and Pesticide Dynamics During a Flood Event in the Save Agricultural Watershed: Soil-River Transfer Pathways and Controlling Factors. Water, Air, Soil Pollut. 227, 442.
Gandar, A., Jean, S., Canal, J., Marty-Gasset, N., Gilbert, F., Laffaille, P. (2016) Multistress effects on goldfish (Carassius auratus) behavior and metabolism.Environ. Sci. Pollut. Res.23, 3184–3194.
Larue, C., Castillo-Michel, H., Stein, R.J., Fayard, B., Pouyet, E., Villanova, J., Magnin, V., Pradas del Real, A.-E., Trcera, N., Legros, S., Sorieul, S., Sarret, G. (2016) Innovative combination of spectroscopic techniques to reveal nanoparticle fate in a crop plant. Spectrochim. Acta Part B At. Spectrosc. 119, 17–24.
Mombo, S., Schreck, E., Dumat, C., Laplanche, C., Pierart, A., Longchamp, M., Besson, P., Castrec-Rouelle, M. (2016) Bioaccessibility of selenium after human ingestion in relation to its chemical species and compartmentalization in maize. Environ. Geochem. Health 38, 869–883.
Mottier A, Mouchet F, Laplanche C, Cadarsi S, Lagier L, León V, Vázquez E, Sarrieu C, Pinelli E, Gauthier L, Flahaut E (2016). Surface Area of Carbon Nanoparticles: A Dose Metric for a More Realistic Ecotoxicological Assessment. Nano letters 16 (6), 3514-3518.
Mouchet F, Gancet C, Flahaut E, Pinelli E, Boutonnet JC, Gauthier L. (2016). International standardized procedures for in vivo evaluation of multi-walled carbon nanotube toxicity in water. Toxicological & Environmental Chemistry, 1-19,
Muzi L, Mouchet F, Cadarsi S, Janowska I, Russier J, Ménard-Moyon C, Risuleo G, Soula B,Galibert AM, Flahaut E, Pinelli E, Gauthier G, Bianco A. (2016). Examining the impact of multi-layer graphene using cellular and amphibian models. 2D Materials. 3 (2), doi:10.1088/2053-1583/3/2/025009
Olsen, L.I., Hansen, T.H., Larue, C., Østerberg, J.T., Hoffmann, R.D., Liesche, J., Krämer, U., Surblé, S., Cadarsi, S., Samson, V.A., Grolimund, D., Husted, S., Palmgren, M. (2016) Mother-plant-mediated pumping of zinc into the developing seed. Nat. Plants 2, 16036.
Xiong, T., Dumat, C., Pierart, A., Shahid, M., Kang, Y., Li, N., Bertoni, G., Laplanche, C. (2016) Measurement of metal bioaccessibility in vegetables to improve human exposure assessments: field study of soil–plant–atmosphere transfers in urban areas, South China. Environ. Geochem. Health 38, 1283–1301.